Introduction 1. Current perspectives on high-level groupings of protists 2. Comparative genomics of Plasmodium species 3. The genomes of Dinoflagellates 4. Ciliate genome evolution 5. Molecular evolution of Foraminifera 6. Photosynthetic organelles and endosymbiosis 7. Genome evolution of anaerobic protists: metabolic adaptation via gene acquisition 8. Horizontal and intracellular gene transfer in the Apicomplexa: The scope and functional consequences 9. The nuts and bolts of sequencing protist genomes 10. Comparative genomics of the trypanosomatids 11. The genome of Entamoeba histolytica 12. Genome reduction in Microsporidia 13. Nucleomorphs: remnant nuclear genomes 14. Genomic insights into diatom evolution and metabolism 15. The Dictyostelium genome - a blueprint for a multicellular protist
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